Index

_

_convert_to_entrez() (geneplexus.GenePlexus method)

_get_pos_and_neg_genes() (geneplexus.GenePlexus method) _load_genes() (geneplexus.GenePlexus method)

A

Adjacency

alter_validation_df() (geneplexus.GenePlexus method)

C

check_custom() (geneplexus.GenePlexus method)

check_file() (in module geneplexus.util) check_param() (in module geneplexus.util)

D

download_select_data() (in module geneplexus.download)

dump_config() (geneplexus.GenePlexus method)

E

Edgelist edgelist_to_matrix() (in module geneplexus.custom)

edgelist_to_nodeorder() (in module geneplexus.custom) Embedding

F

features (geneplexus.GenePlexus property) file_loc (geneplexus.GenePlexus property)

fit_and_predict() (geneplexus.GenePlexus method) format_choices() (in module geneplexus.util)

G

geneplexus module GenePlexus (class in geneplexus) geneplexus.custom module geneplexus.util module

get_all_filenames() (in module geneplexus.util) get_all_gscs() (in module geneplexus.util) get_all_net_types() (in module geneplexus.util) GSC gsc (geneplexus.GenePlexus property)

I

Influence

L

load_correction_mat() (in module geneplexus.util) load_correction_order() (in module geneplexus.util) load_gene_features() (in module geneplexus.util) load_geneid_conversion() (in module geneplexus.util)

load_genes() (geneplexus.GenePlexus method) load_genes_universe() (in module geneplexus.util) load_gsc() (in module geneplexus.util) load_node_order() (in module geneplexus.util) load_pretrained_weights() (in module geneplexus.util)

M

make_sim_dfs() (geneplexus.GenePlexus method) make_small_edgelist() (geneplexus.GenePlexus method) mapgene() (in module geneplexus.util)

module geneplexus geneplexus.custom geneplexus.util

N

net_type (geneplexus.GenePlexus property)

normexpand() (in module geneplexus.util)

R

read_gene_list() (in module geneplexus.util)

RWR

S

subset_gsc_to_network() (in module geneplexus.custom)

T

timeout() (in module geneplexus.util)