geneplexus.download

geneplexus.download.download_select_data(data_dir, tasks='All', networks='All', features='All', gscs='All', data_loc='Zenodo', n_jobs=10, retry=True, log_level='INFO')[source]

Select subset of data to download.

Parameters:

  • data_dir (str) – Location of data files.

  • tasks (Literal['All'] | ~typing.Literal['IDconversion', 'MachineLearning', 'Similarities', 'NetworkGraph', 'OriginalGSCs'] | ~typing.List[~typing.Literal['IDconversion', 'MachineLearning', 'Similarities', 'NetworkGraph', 'OriginalGSCs']]) – Task of interest, accept multiple selection as a list. Do all the tasks if set to “All”.

  • networks (Literal['All'] | ~typing.Literal['BioGRID', 'STRING', 'STRING-EXP', 'GIANT-TN'] | ~typing.List[~typing.Literal['BioGRID', 'STRING', 'STRING-EXP', 'GIANT-TN']]) – Networks of interest, accept multiple selection as a list. Do all the networks if set to “All”.

  • features (Literal['All'] | ~typing.Literal['Adjacency', 'Embedding', 'Influence'] | ~typing.List[~typing.Literal['Adjacency', 'Embedding', 'Influence']]) – Network features of interest, accept multiple selection as a list. Do all the features if set to “All”.

  • gscs (Literal['All'] | ~typing.Literal['GO', 'DisGeNet'] | ~typing.List[~typing.Literal['GO', 'DisGeNet']]) – Gene set collection of interest, accept multiple selection as a list. Do all the GSC if set to “All”.

  • n_jobs (int) – Number of concurrent downloading threads.

  • retry (bool) – If set to True, then retry downloading any missing file.

  • data_loc (str) –

  • log_level (Literal['CRITICAL', 'ERROR', 'WARNING', 'INFO', 'DEBUG']) –